#!/bin/bash
. /etc/bashrc

scratch=$(pwd)
shopt -s expand_aliases
export eospath=eos/lhcb/testbeam/velo/timepix3/

if [ -z $KEPLERSYS ]; then . SetupProject.sh Kepler v3r0; fi

tb=July2014
if [ "$1" -gt "2000" ]; then tb=Oct2014; fi
if [ "$1" -gt "3000" ]; then tb=Nov2014; fi
if [ "$1" -gt "3999" ]; then tb=Dec2014; fi
if [ "$1" -gt "4999" ]; then tb=May2015; fi
if [ "$1" -gt "6733" ]; then tb=July2015; fi
if [ "$1" -gt "12000" ]; then tb=Sep2015; fi
if [ "$1" -gt "13509" ]; then tb=Nov2015; fi
# TBDATA
if [ -z "$DATADIR" ]; then
  echo "No output directory defined - define variable $DATADIR"
fi
TBDATA=$DATADIR/public/

mkdir -p $TBDATA/$tb/Run$1/

RUN=$1
echo "Processing Run $1"

condFolder="$eospath/$tb/RootFiles/Run$1/Conditions/"
input_option="Kepler().InputFiles=['$eospath/$tb/RawData/Run$RUN/']"
alignment="Kepler().AlignmentFile='$condFolder/Alignment$1mille.dat'"
job="../options/batch.py"

histo_file="Kepler().HistogramFile='$TBDATA/$tb/Run$RUN/Kepler-histos.root'"
tuple_file="Kepler().TupleFile='$TBDATA/$tb/Run$RUN/Kepler-tuple.root'"
log_file=$TBDATA/$tb/Run$1/Run$1.std.out
alignment_out="TbAlignment().OutputAlignmentFile='Alignment_out.dat'"

while [[ $# > 1 ]]
do
  key="$1"
  case $key in
    -o|--options) # specify the options file to use 
      job="$2"
      shift # past argument
      ;;
    -a|--alignment) #specify an alignment file 
      alignment="Kepler().AlignmentFile='$2'"
      shift # past argument
      ;;
    -ao|--alignmentOut) #specify alignment file output
      alignment_out="TbAlignment().OutputAlignmentFile='$2'"
      shift
      ;;
    -i|--input)
      input_option="Kepler().InputFiles=['$2']"
      shift
      ;;
    -h|--hist) #specify histogram output
      histo_file="Kepler().HistogramFile='$2'"
      shift
      ;;
    -t|--nTuple) #specify nTuple output
      tuple_file="Kepler().TupleFile='$2'"
      shift
      ;;
    -lg|--log) #specify text log location
      log_file=$2
      shift
      ;;
    -l|--local) #use "local" mode for H8 operations
      input_option="Kepler().InputFiles=["
      FILES=""
      for f in {0..10}; do
        for file in /mnt/DATA/Dev$f/Run$RUN/*.dat ; do
          FILES+="'$file',"
        done
      done
      input_option+=`echo $FILES | sed 's/.$//'`
      input_option+="]"
      echo $input_option
      ;;
    -n|--nEvents) #specify a number of events
      nEvents="Kepler().EvtMax=$2"
      shift
      ;;
    --default)
      DEFAULT=YES
      ;;
    *)
      # unknown option
      ;;
  esac
  shift # past argument or value
done

gaudirun.py --option="from Configurables import Kepler, TbAlignment" --option=$histo_file --option=$tuple_file --option=$alignment_out --option=$nEvents  --option=$alignment --option=$input_option $job |& tee $TBDATA/$tb/Run$1/Run$1.std.out